Kirby Swatek's Research Group

Topic: Ubiquitin-like signalling in the immune system

In response to viral infection, cells launch sophisticated defence mechanisms to combat the invading pathogen. The antiviral state is one mechanism that results from global changes in gene expression and extensive remodelling to the landscape of post-translational modifications. Ubiquitin (Ub) and ubiquitin-like protein (Ubl) modifications are crucial signals in this defence response, and therefore, the misregulation of these signalling pathways can have dire consequences, namely increased disease severity.

A central player of the antiviral state is a ubiquitin-like protein, ISG15, which marks thousands of proteins in response to viral infection. To evade this defence response, many viruses suppress ISG15 signalling by removing these modifications with viral proteases. However, despite their abundance and clear viral evasion strategies, the roles of ISG15 modifications remain surprisingly enigmatic. We are fascinated by ISG15's role in the antiviral state and excited to study this underexplored area of innate immune signalling. The long-term goal of the Swatek lab is to visualize the ISG15 system and understand the roles of these modifications in the antiviral state.

Current research focus:

  1. Structural analysis of the writers, readers, and erasers of the ISG15 system
  2. Immunomodulatory functions of ISG15
  3. Viral manipulation of the ISG15 pathway
  4. State-of-the-art method development to study Ub/Ubl modifications

Our research has already revealed fascinating new insights into Ub/Ubl biology and exposed unexpected viral evasion strategies. These discoveries have prompted us to rethink the arms race during pathogenesis, including how the host defends against viruses and how viruses escape the host defence systems. We believe our findings have only scratched the surface and that many unexpected and exciting discoveries are still to come, some of which may lead to the development of new therapeutics.

Values

We are committed to building a lab culture that actively promotes equality, diversity, and inclusion to make progress in science. This commitment will foster a creative and supportive environment that encourages individuals to think freely, express themselves openly, and exchange ideas with mutual respect. We welcome applicants from underrepresented and disadvantaged backgrounds. If you are interested in joining the team, please get in touch.

Swatek Lab
Swatek Lab

People

Sukriti Maity | PhD Rotation Student
Yi Min Ng | Postdoctoral Researcher
Jessica Rowe | PhD Student
Rafael Salazar Claros | PhD Student

Selected Publications

  • Wallace I, Baek K, Prabu JR, Vollrath R, Gronau SV, Schulman BA, Swatek KN (2023) Insights into the ISG15 transfer cascade by the UBE1L activating enzyme Nature Communications  14 1-13 doi:10.1038/s41467-023-43711-3 PMID: 38042859
  • Bandi V, Venema M, Wallace I, Mol MO, Nikoncuk A, Schot R, Slegtenhorst M, Bijlsma E, Khan A, White SM, Rius R, Delatycki MB, Narayanan V, Swatek KN, Barakat TS, and Bustos F (2026) ISGylation is disrupted by UBA7 gene variants identified in individuals with neurodevelopmental disorder phenotypes iScience   doi:10.1016/j.isci.2026.115454
  • Maiwald SA, Schneider LA, Vollrath R, Liwocha J, Maletic MD, Swatek KN, Mulder MPC, Schulman BA (2025) TRIP12 structures reveal HECT E3 formation of K29 linkages and branched ubiquitin chains Nature Structural & Molecular Biology. 32 1766-1775 doi:10.1038/s41594-025-01561-1 PMID: 40419785
  • Andri Vasou, Katie Nightingale, Vladimíra Cetkovská, Jonathan Scheler, Connor G G Bamford, Jelena Andrejeva, Jessica C Rowe, Kirby N Swatek, Ulrich Schwarz-Linek, Richard E Randall, John McLauchlan, Michael P Weekes, Dusan Bogunovic, David J Hughes (2025) ISG15-Dependent Stabilisation of USP18 Is Necessary but Not Sufficient to Regulate Type I Interferon Signalling in Humans Eur J Immunol 55(2): e202451651 doi:10.1002/eji.202451651 PMID: 39931755
  • Clancy A, Rusilowicz-Jones EV, Wallace I, Swatek KN, Urbé S, Clague MJ (2023) ISGylation-independent protection of cell growth by USP18 following interferon stimulation Biochemical Journal 480 1571-1581 doi:10.1042/BCJ20230301 PMID: 37756534